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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: GLIS3
wikigenes
PDBj
CellType: SK-N-SH
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX10976912
GSM5331305: TF ChIP-seq from SK-N-SH (ENCLB664BHK); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GLIS3
Cell type
Cell type Class
Neural
Cell type
SK-N-SH
Primary Tissue
Brain
Tissue Diagnosis
Neuroblastoma
Attributes by original data submitter
Sample
sample_type
cell line
sex
female
dev stage
child
age
4 year
donor ID
ENCDO000ABD
lab
Michael Snyder, Stanford
source
Michael Snyder
health state
Metastatic neuroblastoma from bone marrow
cell line
SK-N-SH
treatments
treatment_term_id: CHEBI:15367; treatment_term_name: all-trans-retinoic acid; treatment_type: chemical; duration: 48; duration_units: hour;
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/716003cd-3ce7-41ce-b1e3-6f203b6632a0/@@download/attachment/ENCODE4%20_Snyder_ChIP-seq_BiorupterTruSeqProtocol_v1.pdf
Sequencing Platform
instrument_model
Illumina HiSeq 4000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
46100553
Reads aligned (%)
94.1
Duplicates removed (%)
27.4
Number of peaks
1490 (qval < 1E-05)
hg19
Number of total reads
46100553
Reads aligned (%)
93.3
Duplicates removed (%)
27.7
Number of peaks
1023 (qval < 1E-05)
Base call quality data from
DBCLS SRA